Error in Ubuntu 9.04 X86_64

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Message 2386 - Posted: 28 Mar 2010, 0:52:12 UTC

<core_client_version>6.10.43</core_client_version>
<![CDATA[
<message>
process exited with code 195 (0xc3, -61)
</message>
<stderr_txt>
wrapper: starting
03:28:26 (2054): wrapper: running unzip.exe (-qq -o "./*.zip" -d ".")

2 archives were successfully processed.
03:28:28 (2054): wrapper: running ./Python25/python.exe (make_sitecustomize.py ".")
03:28:29 (2054): wrapper: running ./Python25/python.exe ("./MGLToolsPckgs/Support/sitecustomize.py")
03:28:29 (2054): wrapper: running ./Python25/python.exe ("./MGLToolsPckgs/AutoDockTools/Utilities24/prepare_ligand4.py" -l ligand.mol2 -o ligand.pdbqt)
03:28:30 (2054): wrapper: running ./Python25/python.exe ("./MGLToolsPckgs/AutoDockTools/Utilities24/prepare_gpf4.py" -l ligand.pdbqt -r receptor_1.pdbqt -p custom_parameter_file=1 -p parameter_file=AD4_parameters.dat)
03:28:31 (2054): wrapper: running ./Python25/python.exe ("./MGLToolsPckgs/AutoDockTools/Utilities24/prepare_dpf4.py" -l ligand.pdbqt -r receptor_1.pdbqt -p compute_unbound_extended_flag=0 -p ga_run=10 -p ga_num_evals=1000000 -p seed=751294)
03:28:32 (2054): wrapper: running ../../projects/boinc.drugdiscoveryathome.com/autogrid_1.401_x86_64-pc-linux-gnu (-p receptor_1.gpf -l out.glg)
03:28:47 (2054): wrapper: running ../../projects/boinc.drugdiscoveryathome.com/autodock_1.410_x86_64-pc-linux-gnu (-p ligand_receptor_1.dpf -l out_1.dlg)
03:31:46 (2054): wrapper: running ./Python25/python.exe ("./MGLToolsPckgs/AutoDockTools/Utilities24/summarize_docking.py" -l out_1.dlg -r receptor_1.pdbqt -o summary_1.txt)
03:31:48 (2054): wrapper: running ./Python25/python.exe ("./MGLToolsPckgs/AutoDockTools/Utilities24/prepare_gpf4.py" -l ligand.pdbqt -r receptor_2.pdbqt -p custom_parameter_file=1 -p parameter_file=AD4_parameters.dat)
03:31:49 (2054): wrapper: running ./Python25/python.exe ("./MGLToolsPckgs/AutoDockTools/Utilities24/prepare_dpf4.py" -l ligand.pdbqt -r receptor_2.pdbqt -p compute_unbound_extended_flag=0 -p ga_run=10 -p ga_num_evals=1000000 -p seed=625025)
03:31:50 (2054): wrapper: running ../../projects/boinc.drugdiscoveryathome.com/autogrid_1.401_x86_64-pc-linux-gnu (-p receptor_2.gpf -l out.glg)
03:32:04 (2054): wrapper: running ../../projects/boinc.drugdiscoveryathome.com/autodock_1.410_x86_64-pc-linux-gnu (-p ligand_receptor_2.dpf -l out_2.dlg)
03:35:08 (2054): wrapper: running ./Python25/python.exe ("./MGLToolsPckgs/AutoDockTools/Utilities24/summarize_docking.py" -l out_2.dlg -r receptor_2.pdbqt -o summary_2.txt)
03:35:10 (2054): wrapper: running ./Python25/python.exe ("./MGLToolsPckgs/AutoDockTools/Utilities24/prepare_gpf4.py" -l ligand.pdbqt -r receptor_3.pdbqt -p custom_parameter_file=1 -p parameter_file=AD4_parameters.dat)
03:35:11 (2054): wrapper: running ./Python25/python.exe ("./MGLToolsPckgs/AutoDockTools/Utilities24/prepare_dpf4.py" -l ligand.pdbqt -r receptor_3.pdbqt -p compute_unbound_extended_flag=0 -p ga_run=10 -p ga_num_evals=1000000 -p seed=669806)
03:35:12 (2054): wrapper: running ../../projects/boinc.drugdiscoveryathome.com/autogrid_1.401_x86_64-pc-linux-gnu (-p receptor_3.gpf -l out.glg)
03:35:26 (2054): wrapper: running ../../projects/boinc.drugdiscoveryathome.com/autodock_1.410_x86_64-pc-linux-gnu (-p ligand_receptor_3.dpf -l out_3.dlg)
03:38:23 (2054): wrapper: running ./Python25/python.exe ("./MGLToolsPckgs/AutoDockTools/Utilities24/summarize_docking.py" -l out_3.dlg -r receptor_3.pdbqt -o summary_3.txt)
03:38:24 (2054): wrapper: running ./Python25/python.exe ("./MGLToolsPckgs/AutoDockTools/Utilities24/prepare_gpf4.py" -l ligand.pdbqt -r receptor_4.pdbqt -p custom_parameter_file=1 -p parameter_file=AD4_parameters.dat)
03:38:25 (2054): wrapper: running ./Python25/python.exe ("./MGLToolsPckgs/AutoDockTools/Utilities24/prepare_dpf4.py" -l ligand.pdbqt -r receptor_4.pdbqt -p compute_unbound_extended_flag=0 -p ga_run=10 -p ga_num_evals=1000000 -p seed=139247)
03:38:26 (2054): wrapper: running ../../projects/boinc.drugdiscoveryathome.com/autogrid_1.401_x86_64-pc-linux-gnu (-p receptor_4.gpf -l out_4.glg)
03:38:40 (2054): wrapper: running ../../projects/boinc.drugdiscoveryathome.com/autodock_1.410_x86_64-pc-linux-gnu (-p ligand_receptor_4.dpf -l out_4.dlg)
03:41:38 (2054): wrapper: running ./Python25/python.exe ("./MGLToolsPckgs/AutoDockTools/Utilities24/summarize_docking.py" -l out_4.dlg -r receptor_4.pdbqt -o summary_4.txt)
03:41:39 (2054): wrapper: running ./Python25/python.exe ("./MGLToolsPckgs/AutoDockTools/Utilities24/prepare_gpf4.py" -l ligand.pdbqt -r receptor_5.pdbqt -p custom_parameter_file=1 -p parameter_file=AD4_parameters.dat)
03:41:40 (2054): wrapper: running ./Python25/python.exe ("./MGLToolsPckgs/AutoDockTools/Utilities24/prepare_dpf4.py" -l ligand.pdbqt -r receptor_5.pdbqt -p compute_unbound_extended_flag=0 -p ga_run=10 -p ga_num_evals=1000000 -p seed=551300)
03:41:41 (2054): wrapper: running ../../projects/boinc.drugdiscoveryathome.com/autogrid_1.401_x86_64-pc-linux-gnu (-p receptor_5.gpf -l out.glg)
03:41:55 (2054): wrapper: running ../../projects/boinc.drugdiscoveryathome.com/autodock_1.410_x86_64-pc-linux-gnu (-p ligand_receptor_5.dpf -l out_5.dlg)
03:44:53 (2054): wrapper: running ./Python25/python.exe ("./MGLToolsPckgs/AutoDockTools/Utilities24/summarize_docking.py" -l out_5.dlg -r receptor_5.pdbqt -o summary_5.txt)
03:44:54 (2054): wrapper: running ./Python25/python.exe ("./MGLToolsPckgs/AutoDockTools/Utilities24/prepare_gpf4.py" -l ligand.pdbqt -r receptor_6.pdbqt -p custom_parameter_file=1 -p parameter_file=AD4_parameters.dat)
03:44:55 (2054): wrapper: running ./Python25/python.exe ("./MGLToolsPckgs/AutoDockTools/Utilities24/prepare_dpf4.py" -l ligand.pdbqt -r receptor_6.pdbqt -p compute_unbound_extended_flag=0 -p ga_run=10 -p ga_num_evals=1000000 -p seed=176502)
03:44:56 (2054): wrapper: running ../../projects/boinc.drugdiscoveryathome.com/autogrid_1.401_x86_64-pc-linux-gnu (-p receptor_6.gpf -l out.glg)
03:45:10 (2054): wrapper: running ../../projects/boinc.drugdiscoveryathome.com/autodock_1.410_x86_64-pc-linux-gnu (-p ligand_receptor_6.dpf -l out_6.dlg)
03:48:10 (2054): wrapper: running ./Python25/python.exe ("./MGLToolsPckgs/AutoDockTools/Utilities24/summarize_docking.py" -l out_6.dlg -r receptor_6.pdbqt -o summary_6.txt)
03:48:12 (2054): wrapper: running ./Python25/python.exe ("./MGLToolsPckgs/AutoDockTools/Utilities24/prepare_gpf4.py" -l ligand.pdbqt -r receptor_7.pdbqt -p custom_parameter_file=1 -p parameter_file=AD4_parameters.dat)
03:48:13 (2054): wrapper: running ./Python25/python.exe ("./MGLToolsPckgs/AutoDockTools/Utilities24/prepare_dpf4.py" -l ligand.pdbqt -r receptor_7.pdbqt -p compute_unbound_extended_flag=0 -p ga_run=10 -p ga_num_evals=1000000 -p seed=870134)
03:48:14 (2054): wrapper: running ../../projects/boinc.drugdiscoveryathome.com/autogrid_1.401_x86_64-pc-linux-gnu (-p receptor_7.gpf -l out.glg)
03:48:28 (2054): wrapper: running ../../projects/boinc.drugdiscoveryathome.com/autodock_1.410_x86_64-pc-linux-gnu (-p ligand_receptor_7.dpf -l out_7.dlg)
03:51:25 (2054): wrapper: running ./Python25/python.exe ("./MGLToolsPckgs/AutoDockTools/Utilities24/summarize_docking.py" -l out_7.dlg -r receptor_7.pdbqt -o summary_7.txt)
03:51:27 (2054): wrapper: running ./Python25/python.exe ("./MGLToolsPckgs/AutoDockTools/Utilities24/prepare_gpf4.py" -l ligand.pdbqt -r receptor_8.pdbqt -p custom_parameter_file=1 -p parameter_file=AD4_parameters.dat)
app exit status: 0x100
03:51:28 (2054): called boinc_finish

</stderr_txt>
]]>
ID: 2386 · Rating: 0 · rate: Rate + / Rate - Report as offensive
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Message 2387 - Posted: 28 Mar 2010, 15:31:42 UTC
Last modified: 28 Mar 2010, 15:35:48 UTC

Same here with karmic64 (Ubuntu 9.10 X86_64):

<core_client_version>6.10.17</core_client_version>
<![CDATA[
<message>
process exited with code 195 (0xc3, -61)
</message>
<stderr_txt>
wrapper: starting
10:20:03 (22210): wrapper: running unzip.exe (-qq -o "./*.zip" -d ".")

2 archives were successfully processed.
10:20:06 (22210): wrapper: running ./Python25/python.exe (make_sitecustomize.py ".")
10:20:06 (22210): wrapper: running ./Python25/python.exe ("./MGLToolsPckgs/Support/sitecustomize.py")
10:20:06 (22210): wrapper: running ./Python25/python.exe ("./MGLToolsPckgs/AutoDockTools/Utilities24/prepare_ligand4.py" -l ligand.mol2 -o ligand.pdbqt)
10:20:07 (22210): wrapper: running ./Python25/python.exe ("./MGLToolsPckgs/AutoDockTools/Utilities24/prepare_gpf4.py" -l ligand.pdbqt -r receptor_1.pdbqt -p custom_parameter_file=1 -p parameter_file=AD4_parameters.dat)
10:20:08 (22210): wrapper: running ./Python25/python.exe ("./MGLToolsPckgs/AutoDockTools/Utilities24/prepare_dpf4.py" -l ligand.pdbqt -r receptor_1.pdbqt -p compute_unbound_extended_flag=0 -p ga_run=10 -p ga_num_evals=1000000 -p seed=309246)
10:20:09 (22210): wrapper: running ../../projects/boinc.drugdiscoveryathome.com/autogrid_1.401_x86_64-pc-linux-gnu (-p receptor_1.gpf -l out.glg)
10:20:18 (22210): wrapper: running ../../projects/boinc.drugdiscoveryathome.com/autodock_1.410_x86_64-pc-linux-gnu (-p ligand_receptor_1.dpf -l out_1.dlg)
10:23:53 (22210): wrapper: running ./Python25/python.exe ("./MGLToolsPckgs/AutoDockTools/Utilities24/summarize_docking.py" -l out_1.dlg -r receptor_1.pdbqt -o summary_1.txt)
10:23:55 (22210): wrapper: running ./Python25/python.exe ("./MGLToolsPckgs/AutoDockTools/Utilities24/prepare_gpf4.py" -l ligand.pdbqt -r receptor_2.pdbqt -p custom_parameter_file=1 -p parameter_file=AD4_parameters.dat)
10:23:57 (22210): wrapper: running ./Python25/python.exe ("./MGLToolsPckgs/AutoDockTools/Utilities24/prepare_dpf4.py" -l ligand.pdbqt -r receptor_2.pdbqt -p compute_unbound_extended_flag=0 -p ga_run=10 -p ga_num_evals=1000000 -p seed=371485)
10:23:58 (22210): wrapper: running ../../projects/boinc.drugdiscoveryathome.com/autogrid_1.401_x86_64-pc-linux-gnu (-p receptor_2.gpf -l out.glg)
10:24:07 (22210): wrapper: running ../../projects/boinc.drugdiscoveryathome.com/autodock_1.410_x86_64-pc-linux-gnu (-p ligand_receptor_2.dpf -l out_2.dlg)
10:27:48 (22210): wrapper: running ./Python25/python.exe ("./MGLToolsPckgs/AutoDockTools/Utilities24/summarize_docking.py" -l out_2.dlg -r receptor_2.pdbqt -o summary_2.txt)
10:27:50 (22210): wrapper: running ./Python25/python.exe ("./MGLToolsPckgs/AutoDockTools/Utilities24/prepare_gpf4.py" -l ligand.pdbqt -r receptor_3.pdbqt -p custom_parameter_file=1 -p parameter_file=AD4_parameters.dat)
10:27:52 (22210): wrapper: running ./Python25/python.exe ("./MGLToolsPckgs/AutoDockTools/Utilities24/prepare_dpf4.py" -l ligand.pdbqt -r receptor_3.pdbqt -p compute_unbound_extended_flag=0 -p ga_run=10 -p ga_num_evals=1000000 -p seed=122029)
10:27:53 (22210): wrapper: running ../../projects/boinc.drugdiscoveryathome.com/autogrid_1.401_x86_64-pc-linux-gnu (-p receptor_3.gpf -l out.glg)
10:28:06 (22210): wrapper: running ../../projects/boinc.drugdiscoveryathome.com/autodock_1.410_x86_64-pc-linux-gnu (-p ligand_receptor_3.dpf -l out_3.dlg)
10:31:52 (22210): wrapper: running ./Python25/python.exe ("./MGLToolsPckgs/AutoDockTools/Utilities24/summarize_docking.py" -l out_3.dlg -r receptor_3.pdbqt -o summary_3.txt)
10:31:54 (22210): wrapper: running ./Python25/python.exe ("./MGLToolsPckgs/AutoDockTools/Utilities24/prepare_gpf4.py" -l ligand.pdbqt -r receptor_4.pdbqt -p custom_parameter_file=1 -p parameter_file=AD4_parameters.dat)
10:31:56 (22210): wrapper: running ./Python25/python.exe ("./MGLToolsPckgs/AutoDockTools/Utilities24/prepare_dpf4.py" -l ligand.pdbqt -r receptor_4.pdbqt -p compute_unbound_extended_flag=0 -p ga_run=10 -p ga_num_evals=1000000 -p seed=540877)
10:31:57 (22210): wrapper: running ../../projects/boinc.drugdiscoveryathome.com/autogrid_1.401_x86_64-pc-linux-gnu (-p receptor_4.gpf -l out_4.glg)
10:32:09 (22210): wrapper: running ../../projects/boinc.drugdiscoveryathome.com/autodock_1.410_x86_64-pc-linux-gnu (-p ligand_receptor_4.dpf -l out_4.dlg)
10:35:46 (22210): wrapper: running ./Python25/python.exe ("./MGLToolsPckgs/AutoDockTools/Utilities24/summarize_docking.py" -l out_4.dlg -r receptor_4.pdbqt -o summary_4.txt)
10:35:48 (22210): wrapper: running ./Python25/python.exe ("./MGLToolsPckgs/AutoDockTools/Utilities24/prepare_gpf4.py" -l ligand.pdbqt -r receptor_5.pdbqt -p custom_parameter_file=1 -p parameter_file=AD4_parameters.dat)
10:35:50 (22210): wrapper: running ./Python25/python.exe ("./MGLToolsPckgs/AutoDockTools/Utilities24/prepare_dpf4.py" -l ligand.pdbqt -r receptor_5.pdbqt -p compute_unbound_extended_flag=0 -p ga_run=10 -p ga_num_evals=1000000 -p seed=965231)
10:35:51 (22210): wrapper: running ../../projects/boinc.drugdiscoveryathome.com/autogrid_1.401_x86_64-pc-linux-gnu (-p receptor_5.gpf -l out.glg)
10:36:03 (22210): wrapper: running ../../projects/boinc.drugdiscoveryathome.com/autodock_1.410_x86_64-pc-linux-gnu (-p ligand_receptor_5.dpf -l out_5.dlg)
10:39:26 (22210): wrapper: running ./Python25/python.exe ("./MGLToolsPckgs/AutoDockTools/Utilities24/summarize_docking.py" -l out_5.dlg -r receptor_5.pdbqt -o summary_5.txt)
10:39:28 (22210): wrapper: running ./Python25/python.exe ("./MGLToolsPckgs/AutoDockTools/Utilities24/prepare_gpf4.py" -l ligand.pdbqt -r receptor_6.pdbqt -p custom_parameter_file=1 -p parameter_file=AD4_parameters.dat)
10:39:29 (22210): wrapper: running ./Python25/python.exe ("./MGLToolsPckgs/AutoDockTools/Utilities24/prepare_dpf4.py" -l ligand.pdbqt -r receptor_6.pdbqt -p compute_unbound_extended_flag=0 -p ga_run=10 -p ga_num_evals=1000000 -p seed=589685)
10:39:30 (22210): wrapper: running ../../projects/boinc.drugdiscoveryathome.com/autogrid_1.401_x86_64-pc-linux-gnu (-p receptor_6.gpf -l out.glg)
10:39:41 (22210): wrapper: running ../../projects/boinc.drugdiscoveryathome.com/autodock_1.410_x86_64-pc-linux-gnu (-p ligand_receptor_6.dpf -l out_6.dlg)
10:42:57 (22210): wrapper: running ./Python25/python.exe ("./MGLToolsPckgs/AutoDockTools/Utilities24/summarize_docking.py" -l out_6.dlg -r receptor_6.pdbqt -o summary_6.txt)
10:42:58 (22210): wrapper: running ./Python25/python.exe ("./MGLToolsPckgs/AutoDockTools/Utilities24/prepare_gpf4.py" -l ligand.pdbqt -r receptor_7.pdbqt -p custom_parameter_file=1 -p parameter_file=AD4_parameters.dat)
10:43:00 (22210): wrapper: running ./Python25/python.exe ("./MGLToolsPckgs/AutoDockTools/Utilities24/prepare_dpf4.py" -l ligand.pdbqt -r receptor_7.pdbqt -p compute_unbound_extended_flag=0 -p ga_run=10 -p ga_num_evals=1000000 -p seed=371634)
10:43:01 (22210): wrapper: running ../../projects/boinc.drugdiscoveryathome.com/autogrid_1.401_x86_64-pc-linux-gnu (-p receptor_7.gpf -l out.glg)
10:43:11 (22210): wrapper: running ../../projects/boinc.drugdiscoveryathome.com/autodock_1.410_x86_64-pc-linux-gnu (-p ligand_receptor_7.dpf -l out_7.dlg)
10:46:45 (22210): wrapper: running ./Python25/python.exe ("./MGLToolsPckgs/AutoDockTools/Utilities24/summarize_docking.py" -l out_7.dlg -r receptor_7.pdbqt -o summary_7.txt)
10:46:47 (22210): wrapper: running ./Python25/python.exe ("./MGLToolsPckgs/AutoDockTools/Utilities24/prepare_gpf4.py" -l ligand.pdbqt -r receptor_8.pdbqt -p custom_parameter_file=1 -p parameter_file=AD4_parameters.dat)
app exit status: 0x100
10:46:48 (22210): called boinc_finish

</stderr_txt>
]]>



If it would happen immediately, it would be finer, but it takes between 20 and 40 minutes to crash, and there aren't even any error messages in the messages tab:
So 28 Mär 2010 15:54:10 CEST	DrugDiscovery	Sending scheduler request: To fetch work.
So 28 Mär 2010 15:54:10 CEST	DrugDiscovery	Reporting 1 completed tasks, requesting new tasks for CPU
So 28 Mär 2010 15:54:15 CEST	DrugDiscovery	Scheduler request completed: got 1 new tasks
So 28 Mär 2010 15:54:17 CEST	DrugDiscovery	Started download of 31773_ChemDiv_5400-0816_1269717080909630000.txt
So 28 Mär 2010 15:54:17 CEST	DrugDiscovery	Started download of PMC1IJY.zip_1269735510575743000.zip
So 28 Mär 2010 15:54:20 CEST	DrugDiscovery	Finished download of 31773_ChemDiv_5400-0816_1269717080909630000.txt
So 28 Mär 2010 15:54:20 CEST	DrugDiscovery	Started download of job_10_1269735510575743000.txt
So 28 Mär 2010 15:54:23 CEST	DrugDiscovery	Finished download of job_10_1269735510575743000.txt
So 28 Mär 2010 15:54:23 CEST	DrugDiscovery	Started download of top_summary_1269735510575743000.txt
So 28 Mär 2010 15:54:25 CEST	DrugDiscovery	Finished download of top_summary_1269735510575743000.txt
So 28 Mär 2010 15:54:27 CEST	DrugDiscovery	Finished download of PMC1IJY.zip_1269735510575743000.zip
So 28 Mär 2010 16:11:57 CEST	DrugDiscovery	Starting rcs_ga_run_10_bt_PMC1IJY.zip_lig_31773_ChemDiv_5400-0816_ts_1269717080909630000_0
So 28 Mär 2010 16:11:58 CEST	DrugDiscovery	Starting task rcs_ga_run_10_bt_PMC1IJY.zip_lig_31773_ChemDiv_5400-0816_ts_1269717080909630000_0 using autodock_mgl version 517
So 28 Mär 2010 16:31:19 CEST	DrugDiscovery	Computation for task rcs_ga_run_10_bt_PMC1IJY.zip_lig_31773_ChemDiv_5400-0816_ts_1269717080909630000_0 finished

Gruesse vom Saenger

For questions about Boinc look in the BOINC-Wiki
ID: 2387 · Rating: 0 · rate: Rate + / Rate - Report as offensive

Message boards : Number crunching : Error in Ubuntu 9.04 X86_64


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