mdrun checksum errors

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Profile Jack Shultz
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Message 1369 - Posted: 22 Sep 2009, 12:53:02 UTC
Last modified: 22 Sep 2009, 12:53:18 UTC

stderr out
<core_client_version>6.6.17</core_client_version>
<![CDATA[
<message>
WU download error: couldn't get input files:
<file_xfer_error>
<file_name>md_100ps_P9_LEU75_ILE78_LEU121_MET122_40867_LOPAC_Sigma_1253399769331446830</file_name>
<error_code>-119</error_code>
<error_message>MD5 check failed</error_message>
</file_xfer_error>

</message>
]]>


I notice lots of these MD5 checksum errors on download...any ideas why?
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Profile Rabinovitch
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Message 1370 - Posted: 22 Sep 2009, 15:39:24 UTC

As we already met several times an impossibility of applications and WU files loading, may be the problem is in project's server? Or you may try to compress WU data with 3% of recovery information? :-)
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Profile [AF>EDLS] frederic abussan
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Message 1371 - Posted: 22 Sep 2009, 15:56:59 UTC - in response to Message 1370.  
Last modified: 22 Sep 2009, 16:15:31 UTC

I have mdrun 7.1 that turn since 5 o'clock and time remaining is a 158 hours is normal? Dr. ID 430 Win 7 64 /
And all stay at 50 %
Here today gone tomorrow
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Profile Jack Shultz
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Message 1373 - Posted: 22 Sep 2009, 18:01:20 UTC - in response to Message 1371.  

question is what is the last time it modified a file in the slot directory? If nothing is getting modified for over an hour then it is not running properly. I know that check pointing. Check pointing is high on my agenda so it does not look like they are stuck in a loop. some of these mdruns may take a 2 days to complete.
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Profile Tim Turner
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Message 1375 - Posted: 22 Sep 2009, 18:45:40 UTC - in response to Message 1373.  
Last modified: 22 Sep 2009, 18:48:55 UTC

some of these mdruns may take a 2 days to complete.


in other words, don't turn off the computer for sometime....
and place a bet..
i'm estimating 4 days give or take a few hours..
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Profile [AF>EDLS] frederic abussan
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Message 1376 - Posted: 22 Sep 2009, 19:28:45 UTC - in response to Message 1375.  

I took the bet but not on my pc gamer, on the one cited above

Here today gone tomorrow
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Message 1377 - Posted: 22 Sep 2009, 21:34:35 UTC - in response to Message 1373.  
Last modified: 22 Sep 2009, 21:43:41 UTC

some of these mdruns may take a 2 days to complete.

As in 48 hours? With a 3 day deadline? The few I just finished only took a couple of seconds, but the ones being crunched now are busy for 2 hours now, and as I just read could take up to 2 days (my slow-poke maybe even 3 then). I hope the rest of the ones I still have will not take that long, otherwise I'd have to abort them. Maybe the deadline should be somewhat further away in the future?

Bart
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Profile Tim Turner
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Message 1379 - Posted: 22 Sep 2009, 23:46:16 UTC - in response to Message 1377.  

100ps 5+ hrs, and still going... the new energizer bunny..
Tim Turner
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Profile Rabinovitch
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Message 1380 - Posted: 23 Sep 2009, 3:27:52 UTC

Is there any checkpoints in these Wus? Seems like PC hanged up, and after reset mdrun started to work from 00:00:00 and 0%.

p.s. ain't it time to rename this thread? For example, "mdrun 7.01 foк Windows".
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Profile Jack Shultz
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Message 1389 - Posted: 23 Sep 2009, 14:21:21 UTC - in response to Message 1380.  

checkpointing is my next project :-)
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Profile [AF>EDLS] frederic abussan
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Message 1442 - Posted: 2 Oct 2009, 4:20:31 UTC - in response to Message 1389.  

????

http://www.hiboox.fr/go/images/divers/ddh1,64c3a78fafd45633f3ce750394b172c7.jpg.html
Here today gone tomorrow
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Profile Tim Turner
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Message 1453 - Posted: 2 Oct 2009, 18:07:22 UTC - in response to Message 1442.  

????

http://www.hiboox.fr/go/images/divers/ddh1,64c3a78fafd45633f3ce750394b172c7.jpg.html


i don't get what your asking, but that box has no info?



Tim Turner
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Message 1470 - Posted: 8 Oct 2009, 15:12:01 UTC - in response to Message 1369.  

10/8/2009 10:52:33 AM DrugDiscovery Started download of mdrun_0.714_windows_intelx86.exe
10/8/2009 10:52:33 AM DrugDiscovery Started download of mdrun_s_0.705_windows_intelx86.exe
10/8/2009 10:52:36 AM DrugDiscovery Finished download of mdrun_0.714_windows_intelx86.exe
10/8/2009 10:52:36 AM DrugDiscovery Started download of job_0.710_windows_intelx86.xml
10/8/2009 10:52:38 AM DrugDiscovery Finished download of job_0.710_windows_intelx86.xml
10/8/2009 10:52:38 AM DrugDiscovery Started download of md_5000000_steps_P10_TYR52_LEU33_GLN56_36735_ChemDiv_C614-0998_1254856788637608611
10/8/2009 10:52:55 AM DrugDiscovery Finished download of md_5000000_steps_P10_TYR52_LEU33_GLN56_36735_ChemDiv_C614-0998_1254856788637608611
10/8/2009 10:52:55 AM DrugDiscovery Started download of md_5000000_steps_P10_TYR52_LEU33_GLN56_36717_ChemDiv_E511-3733_1254856773510751281
10/8/2009 10:52:55 AM DrugDiscovery [error] MD5 check failed for md_5000000_steps_P10_TYR52_LEU33_GLN56_36735_ChemDiv_C614-0998_1254856788637608611
10/8/2009 10:52:55 AM DrugDiscovery [error] expected e3ef1eb6188f592be3200ae5aef6fe02, got bc910efcb5d9ac44c8024e5a7da51185
10/8/2009 10:52:55 AM DrugDiscovery [error] Checksum or signature error for md_5000000_steps_P10_TYR52_LEU33_GLN56_36735_ChemDiv_C614-0998_1254856788637608611
10/8/2009 10:53:02 AM DrugDiscovery Finished download of mdrun_s_0.705_windows_intelx86.exe
10/8/2009 10:53:02 AM DrugDiscovery Started download of md_5000000_steps_P10_TYR52_LEU33_GLN56_36788_ChemDiv_C301-4871_1254856839984565851
10/8/2009 10:53:07 AM DrugDiscovery Finished download of md_5000000_steps_P10_TYR52_LEU33_GLN56_36717_ChemDiv_E511-3733_1254856773510751281
10/8/2009 10:53:07 AM DrugDiscovery [error] MD5 check failed for md_5000000_steps_P10_TYR52_LEU33_GLN56_36717_ChemDiv_E511-3733_1254856773510751281
10/8/2009 10:53:07 AM DrugDiscovery [error] expected a0b8e955015a54e639b71949d253d754, got 3dcdae90f2ece556f55e06f9873d8c3e
10/8/2009 10:53:07 AM DrugDiscovery [error] Checksum or signature error for md_5000000_steps_P10_TYR52_LEU33_GLN56_36717_ChemDiv_E511-3733_1254856773510751281
10/8/2009 10:53:12 AM DrugDiscovery Finished download of md_5000000_steps_P10_TYR52_LEU33_GLN56_36788_ChemDiv_C301-4871_1254856839984565851
10/8/2009 10:53:12 AM DrugDiscovery [error] MD5 check failed for md_5000000_steps_P10_TYR52_LEU33_GLN56_36788_ChemDiv_C301-4871_1254856839984565851
10/8/2009 10:53:12 AM DrugDiscovery [error] expected cf5281bb5189d7874685a3acce260c9e, got d1698b7b38564182286505b64e13fb18
10/8/2009 10:53:12 AM DrugDiscovery [error] Checksum or signature error for md_5000000_steps_P10_TYR52_LEU33_GLN56_36788_ChemDiv_C301-4871_1254856839984565851

Tim Turner
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Secunia PSI: http://secunia.com/vulnerability_scanning/personal/
If you need help via voice or Convo; PM me and i will give you details on where i will be; Teamspeak, Yahoo Messenger, or Skype.
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